Systems Biology University of Freiburg
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  ichfdm

Svenja Kemmer

Institute of Physics
University of Freiburg
 
Hermann-Herder-Strasse 3
79104 Freiburg im Breisgau
 
room: High-rise 207
phone: +49 761 203 7710
mail: svenja.kemmer -at- fdm.uni-freiburg.de

 

 
Research Interests:
 
Mathematical modeling in the context of Systems Biology and Systems Medicine
-Model-based predictions of drug responses in breast cancer
-HGF-EGF-induced proliferative signaling pathways in chronically and acute-on-chronically damaged livers
Advanced analytics of quantitative data
-Development of a processing pipeline for mass spectrometry data
Mathematical modeling to guide the construction of smart biohybrid materials
-Development of sensor materials

Publications:


S. Burbano de Lara*, S. Kemmer*, I. Biermayer*, S. Feiler, A. Vlasov, L. A. D'Alessandro, B. Helm, C. Moelders, Y. Dieter, A. Ghallab, J. G. Hengstler, C. Koerner, M. Matz-Soja, C. Goetz, G. Damm, K. Hoffmann, D. Seehofer, T. Berg, M. Schilling, J. Timmer, U. Klingmueller:
Basal MET Phosphorylation is an Indicator of Hepatocyte Dysregulation in Liver Disease.
Molecular Systems Biology, 2024, 1.

H. Mohsenin*, J. Pacheco, S. Kemmer, H. J. Wagner, N. Hoefflin, T. Bergmann, T. Baumann, C. Jerez-Longres, A. Ripp, N. Jork, H. J. Jessen, M. Fussenegger, M. Koehn, J. Timmer, W. Weber:
PenTag, a Versatile Platform for Synthesizing Protein-Polymer Biohybrid Materials.
Advanced Functional Materials, 2023, 2308092.

H. Mohsenin*, H. J. Wagner, M. Rosenblatt, S. Kemmer, F. Drepper, P. Huesgen, J. Timmer, W. Weber:
Design of a Biohybrid Materials Circuit with Binary Decoder Functionality.
Advanced Materials, 2023, 2308092.

S. Kemmer*, S. Bang*, M. Rosenblatt, J. Timmer, D. Kaschek:
BlotIt - Optimal alignment of western blot and qPCR experiments.
PLoS ONE, 2022, 17(8), e0264295.

S. Kemmer*, M. Berdiel-Acer, E. Reinz, J. Sonntag, N. Tarade, S. Bernhardt, M. Fehling-Kaschek, M. Hasmann, U. Korf, S. Wiemann, J. Timmer:
Disentangling ERBB Signaling in Breast Cancer Subtypes -- A Model-Based Analysis.
Cancers, 2022, 14(10), 2379.

L. Schmiester*, Y. Schaelte*, F. T. Bergmann, T. Camba, E. Dukin, J. Egert, F. Froehlich, L. Fuhrmann, A. L. Hauber, S. Kemmer, P. Lakrisenko, C. Loos, S. Merkt, D. Pathirana, E. Raimundez, L. Refisch, M. Rosenblatt, P. L. Stapor, P. Staedter, D. Wang, F. G. Wieland, J. R. Banga, J. Timmer, A.F. Villaverde, S. Sahle, C. Kreutz, J. Hasenauer, D. Weindl:
PEtab - interoperable specification of parameter estimation problems in systems biology.
PLoS Computational Biology, 2021, 17(1), e1008646.

H. J. Wagner*, S. Kemmer, R. Engesser, J. Timmer, W. Weber:
Biofunctionalized Materials Featuring Feedforward and Feedback Circuits Exemplified by the Detection of Botulinum Toxin A.
Advanced Science, 2018, 6(4), 1801320. Journal Cover Picture.

* first author



Projects involved in:
LiSyM Cancer
LiSyM
CIBBS
HER2Low



Conferences:
 
06/2023 Poster Conference on Systems Biology of Human Disease - SBHD 2023 Berlin
04/2023 Poster Conference on Mathematical Life Sciences - MLS 2023 Bonn
11/2022 Talk & Poster Conference on Systems Medicine - e:Med Meeting 2023 Heidelberg
10/2022 Talk International Conference on Systems Biology - ICSB 2022 Berlin
05/2022 Poster Systems Biology of Mammalian Cells - SBMC 2022 Heidelberg
03/2021 Programming
Integrative pathway modeling in systems biology and systems medicine - INCOME Virtual Conference and Hackathon 2021
02/2020 Programming
Integrative pathway modeling in systems biology and systems medicine - INCOME Hackathon 2020 Bonn
11/2019 Talk
Integrative pathway modeling in systems biology and systems medicine - INCOME 2019 Berlin
05/2019 Poster
Conference on Systems Biology of Human Disease - SBHD 2019 Berlin
05/2019
Talk
From Cells to Hospitals - Linking Systems Biology and Precision Medicine - e:Med Summer School 2019
04/2019
Talk
Signal transduction in organells, cells and organisms - GBM Young Scientists Meeting 2019 Guenzburg
10/2018
Poster
Integrative Collaborative Modeling in Systems Medicine - INCOME 2018 Bernried
07/2018 Poster Systems Biology of Mammalian Cells - SBMC 2018 Bremen
02/2018
Poster
Advanced Lecture Course on Systems Biology - SYSBIO 2018 Innsbruck
09/2017AttendenceODE Modelling in Systems Biology - Modelling Workshop 2017 Freiburg
08/2017AttendanceMathematical Modelling, Nonlinear Dynamics, Stochastic and Complex Systems - SummerSchool 2017 Rostock


Curriculum Vitae:
 
Since 06/2023PostDoc in the Group of Prof. Dr. Jens Timmer
08/2017 - 05/2023PhD Student in the Group of Prof. Dr. Jens Timmer
08/2016 - 07/2017Master Thesis in Biophysics in the Group of Prof. Dr. Jens Timmer
10/2014 - 05/2015Visiting International Student at the Department of Cellular and Physiological Science

University of British Columbia, Vancouver, Canada
10/2014 - 06/2017Graduate Student in Biochemistry and Biophysics at University of Freiburg
05/2014 - 08/2014Bachelor Thesis in Epigenetics in the Group of Dr. Patrick Heun at Max Planck Institute

of Immunobiology and Epigenetics Freiburg
10/2011 - 10/2014Undergraduate Student in Molecular Medicine at University of Freiburg
08/2010 - 07/2011 Developmental Voluntary Service in Benin, Africa
06/2010Abitur at Gymnasium Lilienthal, Lilienthal
04/1991Born in Bonn, Nordrhein-Westfalen

Links:
dMod - Dynamic Modeling and Parameter Estimation in R
D2D - Data 2 Dynamics