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1. Reaction Diffusion Simulator

1. Short description

  1. Simulation of reaction diffusion equations Framework for modelling dynamical systems
  2. Space (1D or 2D) is discretized by finite differences and translated to a big ODE system (solved by ode15s)

2. Applicability/restrictions/pitfalls

  1. Model setup like in D2D with .def files and reLoad
  2. Import & Export to D2D possible
  3. Spatially dependent parameters, zeroflux & periodic boundary conditions possible

3. Code availability and implementations

  1. D2D: arToPDE, rePDE2ar
  2. dmod: not implemented

4. Publications from the Timmer group

  1. Raphael Engesser‘s PhD thesis
  2. https://github.com/rengesser/Reaction-diffusion-simulator
  1. Reaction Diffusion Simulator